- Obituaries, publications, reprints
- Personal, correspondence, pamphlets re: Stanford University
- Stanford University
- Writings, publications, correspondence, Klein's gen. of fishes
- Pan Pacific Union
- Manuscript "A Catalogue of the Fishes of Japan" (with John O. Snyder)
- C.A.S. and University of California publications, other publications
- The Fur Seals and Fur Seal Islands of the North Pacific Ocean, Fishes of Samoa, and other publications
- Other scientific or popular articles
- Publications
- Proceedings of the US National Museum 1879-1921, Smithsonian Reports 1926-1928